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LOC117434053 heat shock cognate 71 kDa protein [ Acipenser ruthenus (sterlet) ]

Gene ID: 117434053, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117434053
Gene description
heat shock cognate 71 kDa protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Also known as
hsc70
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Genomic context

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See LOC117434053 in Genome Data Viewer
Location:
chromosome: 41
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 41 NC_081229.1 (827926..837663, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) Unplaced Scaffold NW_023261362.1 (11617..22968)

Chromosome 41 - NC_081229.1Genomic Context describing neighboring genes Neighboring gene chemerin-like receptor 1 Neighboring gene chymotrypsin-like protease CTRL-1 Neighboring gene TBC1 domain family member 15 Neighboring gene interferon-inducible GTPase 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heat shock protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables misfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to unfolded protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chaperone cofactor-dependent protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat shock cognate 71 kDa protein
Names
heat shock cognate 70

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081229.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    827926..837663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059011160.1 → XP_058867143.1  heat shock cognate 71 kDa protein isoform X2

  2. XM_059011159.1 → XP_058867142.1  heat shock cognate 71 kDa protein isoform X1

  3. XM_059011158.1 → XP_058867141.1  heat shock cognate 71 kDa protein isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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