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LOC117433341 tumor necrosis factor receptor superfamily member 16-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117433341, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117433341
Gene description
tumor necrosis factor receptor superfamily member 16-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117433341 in Genome Data Viewer
Location:
chromosome: 33
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 33 NC_081221.1 (12219224..12274382, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 31 NC_048353.1 (12234140..12295877, complement)

Chromosome 33 - NC_081221.1Genomic Context describing neighboring genes Neighboring gene speckle-type POZ protein-like Neighboring gene neurexophilin-1-like Neighboring gene frizzled-2-like Neighboring gene mucin-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables coreceptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables death receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nerve growth factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rho protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 16-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081221.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    12219224..12274382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034055499.3 → XP_033911390.1  tumor necrosis factor receptor superfamily member 16-like

    UniProtKB/TrEMBL
    A0A662YWF0
    Conserved Domains (3) summary
    cd08311
    Location:326 → 407
    Death_p75NR; Death domain of p75 Neurotrophin Receptor
    cd13416
    Location:22 → 180
    TNFRSF16; Tumor necrosis factor receptor superfamily member 16 (TNFRSF16), also known as p75 neurotrophin receptor (p75NTR) or CD271
    pfam18422
    Location:229 → 266
    TNFR_16_TM; Tumor necrosis factor receptor member 16 trans-membrane domain
Nucleotide Protein
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