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LOC117432365 carbohydrate sulfotransferase 1-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117432365, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117432365
Gene description
carbohydrate sulfotransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117432365 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 27 NC_081215.1 (23697630..23705799)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 23 NC_048345.1 (14378397..14386563, complement)

Chromosome 27 - NC_081215.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member C1 Neighboring gene uncharacterized LOC131701819 Neighboring gene transmembrane protein 263 Neighboring gene guanylyl cyclase-activating protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081215.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    23697630..23705799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034054172.3 → XP_033910063.1  carbohydrate sulfotransferase 1-like

    UniProtKB/TrEMBL
    A0A444U115
    Conserved Domains (1) summary
    cl21551
    Location:200 → 393
    Sulfotransfer_3; Sulfotransferase family

  2. XM_059002208.1 → XP_058858191.1  carbohydrate sulfotransferase 1-like

    UniProtKB/TrEMBL
    A0A444U115
Nucleotide Protein
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Molecular Biology Databases