U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117430634 ribosomal protein S6 kinase alpha-6 [ Acipenser ruthenus (sterlet) ]

Gene ID: 117430634, updated on 26-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC117430634
Gene description
ribosomal protein S6 kinase alpha-6
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117430634 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 26 NC_081214.1 (20510977..20536199, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 20 NC_048342.1 (6126408..6151209)

Chromosome 26 - NC_081214.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 182-like Neighboring gene POU domain, class 3, transcription factor 4-B Neighboring gene highly divergent homeobox-like Neighboring gene connector enhancer of kinase suppressor of ras 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosomal protein S6 kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ribosomal protein S6 kinase alpha-6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081214.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    20510977..20536199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034050898.3 → XP_033906789.1  ribosomal protein S6 kinase alpha-6 isoform X2

    Conserved Domains (2) summary
    cd05582
    Location:71 → 387
    STKc_RSK_N; N-terminal catalytic domain of the Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase
    cd14177
    Location:415 → 709
    STKc_RSK4_C; C-terminal catalytic domain of the Serine/Threonine Kinase, Ribosomal S6 kinase 4 (also called Ribosomal protein S6 kinase alpha-6 or 90kDa ribosomal protein S6 kinase 6)

  2. XM_034050897.3 → XP_033906788.1  ribosomal protein S6 kinase alpha-6 isoform X1

    Conserved Domains (2) summary
    cd05582
    Location:71 → 387
    STKc_RSK_N; N-terminal catalytic domain of the Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase
    cd14177
    Location:416 → 710
    STKc_RSK4_C; C-terminal catalytic domain of the Serine/Threonine Kinase, Ribosomal S6 kinase 4 (also called Ribosomal protein S6 kinase alpha-6 or 90kDa ribosomal protein S6 kinase 6)

RNA

  1. XR_004548579.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases