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LOC117429123 pigment epithelium-derived factor-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117429123, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117429123
Gene description
pigment epithelium-derived factor-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117429123 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 24 NC_081212.1 (2176150..2181511)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 27 NC_048349.1 (5314801..5320249, complement)

Chromosome 24 - NC_081212.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein 81-like Neighboring gene alpha-2-antiplasmin-like Neighboring gene SET and MYND domain-containing protein 4-like Neighboring gene replication protein A 70 kDa DNA-binding subunit-like Neighboring gene reticulon-4 receptor-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pigment epithelium-derived factor-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081212.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    2176150..2181511
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034048331.3 → XP_033904222.2  pigment epithelium-derived factor-like isoform X2

  2. XM_034048330.3 → XP_033904221.2  pigment epithelium-derived factor-like isoform X2

  3. XM_058997933.1 → XP_058853916.1  pigment epithelium-derived factor-like isoform X1

Nucleotide Protein
Heading Accession and Version

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