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LOC117428159 transducin-like enhancer protein 3 [ Acipenser ruthenus (sterlet) ]

Gene ID: 117428159, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117428159
Gene description
transducin-like enhancer protein 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117428159 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 21 NC_081209.1 (29377302..29402919, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 19 NC_048341.1 (10424631..10449776, complement)

Chromosome 21 - NC_081209.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIF23 Neighboring gene uncharacterized LOC131699173 Neighboring gene uveal autoantigen with coiled-coil domains and ankyrin repeats-like Neighboring gene mortality factor 4-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transducin-like enhancer protein 3; transducin-like enhancer protein 3-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081209.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    29377302..29402919 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034046875.3 → XP_033902766.1  transducin-like enhancer protein 3 isoform X7

    Conserved Domains (4) summary
    cd00200
    Location:474 → 759
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam05109
    Location:251 → 462
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00039
    Location:479 → 518
    7WD40; WD40 repeat [structural motif]
    pfam03920
    Location:9 → 132
    TLE_N; Groucho/TLE N-terminal Q-rich domain

  2. XM_058995499.1 → XP_058851482.1  transducin-like enhancer protein 3 isoform X4

  3. XM_034046874.3 → XP_033902765.1  transducin-like enhancer protein 3 isoform X6

    Conserved Domains (4) summary
    cd00200
    Location:475 → 760
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam05109
    Location:252 → 463
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00039
    Location:480 → 519
    7WD40; WD40 repeat [structural motif]
    pfam03920
    Location:9 → 133
    TLE_N; Groucho/TLE N-terminal Q-rich domain

  4. XM_058995498.1 → XP_058851481.1  transducin-like enhancer protein 3 isoform X3

  5. XM_058995497.1 → XP_058851480.1  transducin-like enhancer protein 3 isoform X2

  6. XM_034046873.3 → XP_033902764.1  transducin-like enhancer protein 3-B isoform X5

    Conserved Domains (4) summary
    cd00200
    Location:485 → 770
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam05109
    Location:262 → 473
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00039
    Location:490 → 529
    7WD40; WD40 repeat [structural motif]
    pfam03920
    Location:9 → 143
    TLE_N; Groucho/TLE N-terminal Q-rich domain

  7. XM_058995496.1 → XP_058851479.1  transducin-like enhancer protein 3 isoform X1

Nucleotide Protein
Heading Accession and Version

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