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LOC117426955 polypeptide N-acetylgalactosaminyltransferase 13 [ Acipenser ruthenus (sterlet) ]

Gene ID: 117426955, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117426955
Gene description
polypeptide N-acetylgalactosaminyltransferase 13
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117426955 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 11 NC_081199.1 (34705410..34752633, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 12 NC_048334.1 (32856100..32901025, complement)

Chromosome 11 - NC_081199.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117426197 Neighboring gene uncharacterized LOC131739476 Neighboring gene G protein-activated inward rectifier potassium channel 1 Neighboring gene protein reprimo A-like Neighboring gene ADP-ribosylation factor-like protein 6-interacting protein 6 Neighboring gene pre-mRNA-processing factor 40 homolog A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081199.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    34705410..34752633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034045224.3 → XP_033901115.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X3

    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 547
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_034045223.3 → XP_033901114.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X2

    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 541
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_059033797.1 → XP_058889780.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

Nucleotide Protein
Heading Accession and Version

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