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LOC117424069 protein naked cuticle homolog 1-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117424069, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117424069
Gene description
protein naked cuticle homolog 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117424069 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 19 NC_081207.1 (32309470..32333254, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 17 NC_048339.1 (618027..642370)

Chromosome 19 - NC_081207.1Genomic Context describing neighboring genes Neighboring gene nucleotide-binding oligomerization domain containing 2 Neighboring gene sorting nexin 20 Neighboring gene bromodomain containing 7 Neighboring gene adenylate cyclase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein naked cuticle homolog 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081207.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    32309470..32333254 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034040101.3 → XP_033895992.1  protein naked cuticle homolog 1-like

    UniProtKB/TrEMBL
    A0A662YUE1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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