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LOC117423350 F-box-like/WD repeat-containing protein TBL1XR1 [ Acipenser ruthenus (sterlet) ]

Gene ID: 117423350, updated on 10-Oct-2024

Summary

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Gene symbol
LOC117423350
Gene description
F-box-like/WD repeat-containing protein TBL1XR1
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117423350 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 17 NC_081205.1 (24431393..24487641)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 18 NC_048340.1 (23781636..23837544)

Chromosome 17 - NC_081205.1Genomic Context describing neighboring genes Neighboring gene zinc finger matrin-type protein 3-like Neighboring gene calcium-activated potassium channel subunit beta-2-like Neighboring gene uncharacterized si:ch211-51h4.2 Neighboring gene inactive N-acetylated-alpha-linked acidic dipeptidase-like protein 2 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box-like/WD repeat-containing protein TBL1XR1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081205.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    24431393..24487641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058990192.1 → XP_058846175.1  F-box-like/WD repeat-containing protein TBL1XR1

  2. XM_034038969.3 → XP_033894860.1  F-box-like/WD repeat-containing protein TBL1XR1

    UniProtKB/TrEMBL
    A0A444TZ78
    Conserved Domains (3) summary
    cd00200
    Location:162 → 468
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:267 → 304
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:7 → 31
    LisH

  3. XM_034038971.3 → XP_033894862.1  F-box-like/WD repeat-containing protein TBL1XR1

    UniProtKB/TrEMBL
    A0A444TZ78
    Conserved Domains (3) summary
    cd00200
    Location:162 → 468
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:267 → 304
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:7 → 31
    LisH

  4. XM_058990193.1 → XP_058846176.1  F-box-like/WD repeat-containing protein TBL1XR1

  5. XM_058990194.1 → XP_058846177.1  F-box-like/WD repeat-containing protein TBL1XR1

Nucleotide Protein
Heading Accession and Version

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