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LOC117422535 alpha-(1,6)-fucosyltransferase [ Acipenser ruthenus (sterlet) ]

Gene ID: 117422535, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117422535
Gene description
alpha-(1,6)-fucosyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117422535 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 15 NC_081203.1 (19208316..19401938, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 16 NC_048338.1 (17109094..17182364, complement)

Chromosome 15 - NC_081203.1Genomic Context describing neighboring genes Neighboring gene protein PALS1-like Neighboring gene gephyrin Neighboring gene uncharacterized LOC131697618 Neighboring gene protein max Neighboring gene protein farnesyltransferase subunit beta-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein 6-alpha-L-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-(1,6)-fucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081203.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    19208316..19401938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034927695.2 → XP_034783586.1  alpha-(1,6)-fucosyltransferase

    Conserved Domains (2) summary
    cd11300
    Location:175 → 500
    Fut8_like; Alpha 1-6-fucosyltransferase
    cd11792
    Location:507 → 561
    SH3_Fut8; Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)

  2. XM_058987340.1 → XP_058843323.1  alpha-(1,6)-fucosyltransferase

  3. XM_058987343.1 → XP_058843326.1  alpha-(1,6)-fucosyltransferase

  4. XM_058987339.1 → XP_058843322.1  alpha-(1,6)-fucosyltransferase

  5. XM_058987337.1 → XP_058843320.1  alpha-(1,6)-fucosyltransferase

  6. XM_058987335.1 → XP_058843318.1  alpha-(1,6)-fucosyltransferase

  7. XM_058987336.1 → XP_058843319.1  alpha-(1,6)-fucosyltransferase

  8. XM_058987334.1 → XP_058843317.1  alpha-(1,6)-fucosyltransferase

  9. XM_058987338.1 → XP_058843321.1  alpha-(1,6)-fucosyltransferase

  10. XM_058987342.1 → XP_058843325.1  alpha-(1,6)-fucosyltransferase

Nucleotide Protein
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