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LOC117422310 protein O-mannosyl-transferase 2-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117422310, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117422310
Gene description
protein O-mannosyl-transferase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117422310 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 15 NC_081203.1 (31542880..31554246, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 16 NC_048338.1 (30075105..30087964, complement)

Chromosome 15 - NC_081203.1Genomic Context describing neighboring genes Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene apoptosis-resistant E3 ubiquitin protein ligase 1-like Neighboring gene latent-transforming growth factor beta-binding protein 2-like Neighboring gene maleylacetoacetate isomerase-like Neighboring gene actin-fragmin kinase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081203.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    31542880..31554246 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034037154.3 → XP_033893045.3  protein O-mannosyl-transferase 2-like isoform X2

  2. XM_058987903.1 → XP_058843886.1  protein O-mannosyl-transferase 2-like isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases