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LOC117422308 protein phosphatase 1A [ Acipenser ruthenus (sterlet) ]

Gene ID: 117422308, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117422308
Gene description
protein phosphatase 1A
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117422308 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 15 NC_081203.1 (32223408..32234020)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 16 NC_048338.1 (30904544..30917174)

Chromosome 15 - NC_081203.1Genomic Context describing neighboring genes Neighboring gene pecanex-like protein 4 Neighboring gene dehydrogenase/reductase SDR family member 7-like Neighboring gene homeobox protein SIX6 Neighboring gene homeobox protein six1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein phosphatase 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081203.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    32223408..32234020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058987974.1 → XP_058843957.1  protein phosphatase 1A isoform X3

    UniProtKB/TrEMBL
    A0A662YLS7

  2. XM_058987976.1 → XP_058843959.1  protein phosphatase 1A isoform X3

    UniProtKB/TrEMBL
    A0A662YLS7

  3. XM_058987975.1 → XP_058843958.1  protein phosphatase 1A isoform X3

    UniProtKB/TrEMBL
    A0A662YLS7

  4. XM_058987973.1 → XP_058843956.1  protein phosphatase 1A isoform X2

    UniProtKB/TrEMBL
    A0A662YLS7

  5. XM_058987972.1 → XP_058843955.1  protein phosphatase 1A isoform X1

    UniProtKB/TrEMBL
    A0A662YLS7
Nucleotide Protein
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