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rapgef2b Rap guanine nucleotide exchange factor 2b [ Acipenser ruthenus (sterlet) ]

Gene ID: 117420947, updated on 19-Mar-2024

Summary

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Gene symbol
rapgef2b
Gene description
Rap guanine nucleotide exchange factor 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Orthologs
human zebrafish all
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Genomic context

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See rapgef2b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 1 NC_081189.1 (85320738..85477871, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 1 NC_048323.1 (30974116..31068311)

Chromosome 1 - NC_081189.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 2A-like Neighboring gene elongator complex protein 1-like Neighboring gene uncharacterized protein C4orf45 Neighboring gene folliculin-interacting protein 2-like Neighboring gene electron transfer flavoprotein dehydrogenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rap guanine nucleotide exchange factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081189.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    85320738..85477871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059031365.1 → XP_058887348.1  rap guanine nucleotide exchange factor 2 isoform X6

  2. XM_059031354.1 → XP_058887337.1  rap guanine nucleotide exchange factor 2 isoform X2

  3. XM_059031357.1 → XP_058887340.1  rap guanine nucleotide exchange factor 2 isoform X3

  4. XM_059031364.1 → XP_058887347.1  rap guanine nucleotide exchange factor 2 isoform X5

  5. XM_059031361.1 → XP_058887344.1  rap guanine nucleotide exchange factor 2 isoform X4

  6. XM_059031351.1 → XP_058887334.1  rap guanine nucleotide exchange factor 2 isoform X1

  7. XM_059031367.1 → XP_058887350.1  rap guanine nucleotide exchange factor 2 isoform X7

  8. XM_059031374.1 → XP_058887357.1  rap guanine nucleotide exchange factor 2 isoform X7

  9. XM_059031390.1 → XP_058887373.1  rap guanine nucleotide exchange factor 2 isoform X9

  10. XM_059031379.1 → XP_058887362.1  rap guanine nucleotide exchange factor 2 isoform X8

Nucleotide Protein
Heading Accession and Version

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