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LOC117420529 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117420529, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117420529
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117420529 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 1 NC_081189.1 (82071513..82335979, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 1 NC_048323.1 (42009770..42118699, complement)

Chromosome 1 - NC_081189.1Genomic Context describing neighboring genes Neighboring gene N6-adenosine-methyltransferase non-catalytic subunit-like Neighboring gene neurotrypsin-like Neighboring gene uncharacterized LOC117972442 Neighboring gene EF-hand calcium-binding domain-containing protein 14-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081189.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    82071513..82335979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059031109.1 → XP_058887092.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like

  2. XM_059031098.1 → XP_058887081.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like

  3. XM_059031101.1 → XP_058887084.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like

  4. XM_059031090.1 → XP_058887073.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like

Nucleotide Protein
Heading Accession and Version

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