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LOC117419600 protein O-mannosyl-transferase TMTC2-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117419600, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117419600
Gene description
protein O-mannosyl-transferase TMTC2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117419600 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 14 NC_081202.1 (6537996..6639206, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 14 NC_048336.1 (30885885..31005851)

Chromosome 14 - NC_081202.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117419622 Neighboring gene thyroid transcription factor 1-associated protein 26 homolog Neighboring gene probable methyltransferase-like protein 25 Neighboring gene potassium voltage-gated channel subfamily A member 1-like Neighboring gene potassium voltage-gated channel subfamily A member 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081202.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    6537996..6639206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034032496.3 → XP_033888387.2  protein O-mannosyl-transferase TMTC2-like isoform X1

    Conserved Domains (4) summary
    PRK11447
    Location:676 → 836
    PRK11447; cellulose synthase subunit BcsC; Provisional
    COG0457
    Location:449 → 737
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:500 → 528
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:248 → 321
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_034032497.3 → XP_033888388.2  protein O-mannosyl-transferase TMTC2-like isoform X2

    Conserved Domains (4) summary
    COG5010
    Location:214 → 369
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    TIGR02917
    Location:295 → 560
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:255 → 283
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:3 → 76
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
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