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tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Acipenser ruthenus (sterlet) ]

Gene ID: 117419584, updated on 19-Mar-2024

Summary

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Gene symbol
tmtc3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Orthologs
human zebrafish all
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Genomic context

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See tmtc3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 14 NC_081202.1 (28063190..28094822, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 14 NC_048336.1 (10804024..10836155)

Chromosome 14 - NC_081202.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 23 member 1 Neighboring gene kit ligand-like Neighboring gene centrosomal protein 290 Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081202.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    28063190..28094822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034032465.3 → XP_033888356.1  protein O-mannosyl-transferase TMTC3 isoform X1

    Conserved Domains (3) summary
    TIGR02917
    Location:438 → 807
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_058986294.1 → XP_058842277.1  protein O-mannosyl-transferase TMTC3 isoform X2

  3. XM_034032464.3 → XP_033888355.1  protein O-mannosyl-transferase TMTC3 isoform X1

    Conserved Domains (3) summary
    TIGR02917
    Location:438 → 807
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)

  4. XM_058986293.1 → XP_058842276.1  protein O-mannosyl-transferase TMTC3 isoform X1

Nucleotide Protein
Heading Accession and Version

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