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LOC117417705 nuclear factor NF-kappa-B p100 subunit-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117417705, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117417705
Gene description
nuclear factor NF-kappa-B p100 subunit-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117417705 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 13 NC_081201.1 (32579419..32613942)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 13 NC_048335.1 (7263169..7285198, complement)

Chromosome 13 - NC_081201.1Genomic Context describing neighboring genes Neighboring gene multimerin-2-like Neighboring gene synuclein-like Neighboring gene glutamate dehydrogenase, mitochondrial Neighboring gene PH and SEC7 domain-containing protein 1-like Neighboring gene elongation of very long chain fatty acids protein 6-like Neighboring gene AIF family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor NF-kappa-B p100 subunit-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081201.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    32579419..32613942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058985157.1 → XP_058841140.1  nuclear factor NF-kappa-B p100 subunit-like isoform X1

    UniProtKB/TrEMBL
    A0A444UKW0

  2. XM_034925767.2 → XP_034781658.2  nuclear factor NF-kappa-B p100 subunit-like isoform X2

    UniProtKB/TrEMBL
    A0A444U3R2

  3. XM_058985159.1 → XP_058841142.1  nuclear factor NF-kappa-B p100 subunit-like isoform X3

    UniProtKB/TrEMBL
    A0A444U3R2

  4. XM_058985161.1 → XP_058841144.1  nuclear factor NF-kappa-B p100 subunit-like isoform X4

    UniProtKB/TrEMBL
    A0A444U3R2

  5. XM_034029913.3 → XP_033885804.3  nuclear factor NF-kappa-B p100 subunit-like isoform X3

    UniProtKB/TrEMBL
    A0A444U3R2

  6. XM_034029915.3 → XP_033885806.3  nuclear factor NF-kappa-B p100 subunit-like isoform X4

    UniProtKB/TrEMBL
    A0A444U3R2

  7. XM_058985158.1 → XP_058841141.1  nuclear factor NF-kappa-B p100 subunit-like isoform X3

    UniProtKB/TrEMBL
    A0A444U3R2

  8. XM_058985160.1 → XP_058841143.1  nuclear factor NF-kappa-B p100 subunit-like isoform X4

    UniProtKB/TrEMBL
    A0A444U3R2
Nucleotide Protein
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