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LOC117417269 heparan-sulfate 6-O-sulfotransferase 1 [ Acipenser ruthenus (sterlet) ]

Gene ID: 117417269, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117417269
Gene description
heparan-sulfate 6-O-sulfotransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 12 NC_081200.1 (14726811..14893261, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 11 NC_048333.1 (14543874..14788310, complement)

Chromosome 12 - NC_081200.1Genomic Context describing neighboring genes Neighboring gene ephrin type-A receptor 3-like Neighboring gene UDP-glucose:glycoprotein glucosyltransferase 1-like Neighboring gene uncharacterized LOC131740025 Neighboring gene uncharacterized LOC117416770

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081200.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    14726811..14893261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034029271.3 → XP_033885162.1  heparan-sulfate 6-O-sulfotransferase 1

    Conserved Domains (1) summary
    pfam03567
    Location:83 → 347
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases