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LOC117417154 lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117417154, updated on 10-Oct-2024

Summary

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Gene symbol
LOC117417154
Gene description
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117417154 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 12 NC_081200.1 (10296063..10315766, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 11 NC_048333.1 (10043812..10052016, complement)

Chromosome 12 - NC_081200.1Genomic Context describing neighboring genes Neighboring gene eukaryotic initiation factor 4A-II Neighboring gene small nucleolar RNA SNORA63 Neighboring gene replication factor C subunit 4-like Neighboring gene guanine nucleotide exchange factor DBS-like Neighboring gene protein ECT2 Neighboring gene spermatogenesis-associated protein 16-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081200.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    10296063..10315766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059034518.1 → XP_058890501.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase-like

  2. XM_059034517.1 → XP_058890500.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase-like

  3. XM_059034516.1 → XP_058890499.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase-like

  4. XM_034029046.3 → XP_033884937.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase-like

    UniProtKB/TrEMBL
    A0A444UCQ9
    Conserved Domains (1) summary
    cl21608
    Location:101 → 295
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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