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LOC117416533 torsin-1A-interacting protein 2-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117416533, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117416533
Gene description
torsin-1A-interacting protein 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117416533 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 12 NC_081200.1 (31016298..31024983)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 11 NC_048333.1 (31460109..31468752)

Chromosome 12 - NC_081200.1Genomic Context describing neighboring genes Neighboring gene cyclic AMP-dependent transcription factor ATF-6 alpha-like Neighboring gene olfactomedin-like protein 2B Neighboring gene ADAMTS-like protein 2 Neighboring gene putative ferric-chelate reductase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081200.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    31016298..31024983
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034027668.3 → XP_033883559.1  torsin-1A-interacting protein 2-like isoform X2

    Conserved Domains (1) summary
    pfam05609
    Location:254 → 465
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_034027667.3 → XP_033883558.1  torsin-1A-interacting protein 2-like isoform X1

    Conserved Domains (1) summary
    pfam05609
    Location:255 → 466
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_034027669.3 → XP_033883560.1  torsin-1A-interacting protein 2-like isoform X3

    UniProtKB/TrEMBL
    A0A662YNG3
    Conserved Domains (1) summary
    pfam05609
    Location:250 → 461
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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