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LOC117416306 putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 [ Acipenser ruthenus (sterlet) ]

Gene ID: 117416306, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117416306
Gene description
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117416306 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 30 NC_081218.1 (7729921..7752205)
101 previous assembly ASM1064508v1 (GCF_010645085.1) Unplaced Scaffold NW_023263984.1 (20719..41806)

Chromosome 30 - NC_081218.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene tyrosine-protein phosphatase non-receptor type 22-like Neighboring gene uncharacterized LOC117429787 Neighboring gene serine/threonine-protein kinase pim-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081218.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    7729921..7752205
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059004919.1 → XP_058860902.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X3

  2. XM_059004917.1 → XP_058860900.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1

  3. XM_059004918.1 → XP_058860901.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X2

  4. XM_059004920.1 → XP_058860903.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X4

Nucleotide Protein
Heading Accession and Version

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