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LOC117415502 RAS guanyl-releasing protein 1-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117415502, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117415502
Gene description
RAS guanyl-releasing protein 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117415502 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 7 NC_081195.1 (22042170..22062927)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 7 NC_048329.1 (42876308..42897926, complement)

Chromosome 7 - NC_081195.1Genomic Context describing neighboring genes Neighboring gene ryanodine receptor 1-like Neighboring gene rho GTPase-activating protein 11A-like Neighboring gene protein FAM98A Neighboring gene heterogeneous nuclear ribonucleoprotein U-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Ras protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RAS guanyl-releasing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081195.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    22042170..22062927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034025981.3 → XP_033881872.1  RAS guanyl-releasing protein 1-like isoform X2

    Conserved Domains (3) summary
    cd06224
    Location:62 → 166
    REM; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately ...
    smart00147
    Location:202 → 438
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cl00040
    Location:541 → 575
    C1; protein kinase C conserved region 1 (C1 domain) superfamily

  2. XM_034025980.3 → XP_033881871.1  RAS guanyl-releasing protein 1-like isoform X1

    Conserved Domains (3) summary
    cd06224
    Location:62 → 166
    REM; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately ...
    smart00147
    Location:202 → 438
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    cl00040
    Location:541 → 593
    C1; protein kinase C conserved region 1 (C1 domain) superfamily
Nucleotide Protein
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