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LOC117414709 carbohydrate sulfotransferase 15-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117414709, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117414709
Gene description
carbohydrate sulfotransferase 15-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117414709 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 7 NC_081195.1 (6620591..6663231)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 7 NC_048329.1 (58340367..58383027, complement)

Chromosome 7 - NC_081195.1Genomic Context describing neighboring genes Neighboring gene ornithine aminotransferase, mitochondrial-like Neighboring gene uncharacterized LOC131737621 Neighboring gene inactive carboxypeptidase-like protein X2 Neighboring gene G-protein coupled receptor 26-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hexose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 15-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081195.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    6620591..6663231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059026226.1 → XP_058882209.1  carbohydrate sulfotransferase 15-like

  2. XM_059026227.1 → XP_058882210.1  carbohydrate sulfotransferase 15-like

  3. XM_059026228.1 → XP_058882211.1  carbohydrate sulfotransferase 15-like

  4. XM_034024476.2 → XP_033880367.1  carbohydrate sulfotransferase 15-like

    Conserved Domains (1) summary
    cl21551
    Location:230 → 377
    Sulfotransfer_3; Sulfotransferase family

  5. XM_034024477.2 → XP_033880368.1  carbohydrate sulfotransferase 15-like

    Conserved Domains (1) summary
    cl21551
    Location:230 → 377
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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