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si:ch73-62b13.1 Carbohydrate sulfotransferase 1-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117414677, updated on 19-Mar-2024

Summary

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Gene symbol
si:ch73-62b13.1
Gene description
Carbohydrate sulfotransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Orthologs
zebrafish all
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Genomic context

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See si:ch73-62b13.1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 7 NC_081195.1 (44539898..44553616, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 7 NC_048329.1 (23516221..23527983)

Chromosome 7 - NC_081195.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117415345 Neighboring gene uncharacterized LOC131737512 Neighboring gene transcription termination factor 2, mitochondrial-like Neighboring gene zgc:153031

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081195.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    44539898..44553616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034024442.2 → XP_033880333.1  carbohydrate sulfotransferase 1-like

    Conserved Domains (1) summary
    cl21551
    Location:210 → 393
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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