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LOC117413455 delta-sarcoglycan-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117413455, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117413455
Gene description
delta-sarcoglycan-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117413455 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 23 NC_081211.1 (29777946..29874926, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 29 NC_048351.1 (528080..577315)

Chromosome 23 - NC_081211.1Genomic Context describing neighboring genes Neighboring gene arginine--tRNA ligase, cytoplasmic-like Neighboring gene rho GTPase-activating protein 7-like Neighboring gene large ribosomal subunit protein uL22m-like Neighboring gene gem-associated protein 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081211.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    29777946..29874926 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058997238.1 → XP_058853221.1  delta-sarcoglycan-like

  2. XM_058997237.1 → XP_058853220.1  delta-sarcoglycan-like

  3. XM_058997236.1 → XP_058853219.1  delta-sarcoglycan-like

  4. XM_058997235.1 → XP_058853218.1  delta-sarcoglycan-like

Nucleotide Protein
Heading Accession and Version

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