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LOC117409679 glial cell line-derived neurotrophic factor-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117409679, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117409679
Gene description
glial cell line-derived neurotrophic factor-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117409679 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 2 NC_081190.1 (39484263..39494590, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 2 NC_048324.1 (31324858..31334479, complement)

Chromosome 2 - NC_081190.1Genomic Context describing neighboring genes Neighboring gene nuclear pore complex protein Nup155-like Neighboring gene WD repeat-containing protein 70-like Neighboring gene uncharacterized LOC131699394 Neighboring gene pikachurin-like Neighboring gene leukemia inhibitory factor receptor-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glial cell-derived neurotrophic factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peripheral nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of branching involved in ureteric bud morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glial cell line-derived neurotrophic factor-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081190.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    39484263..39494590 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034016000.3 → XP_033871891.3  glial cell line-derived neurotrophic factor-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases