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mgat5 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase [ Acipenser ruthenus (sterlet) ]

Gene ID: 117407598, updated on 10-Oct-2024

Summary

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Gene symbol
mgat5
Gene description
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Orthologs
human zebrafish all
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Genomic context

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See mgat5 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 10 NC_081198.1 (46936815..47016835, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 10 NC_048332.1 (43940289..44023783, complement)

Chromosome 10 - NC_081198.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 19-like Neighboring gene cyclin-T2-like Neighboring gene 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase-like Neighboring gene transmembrane protein 163a Neighboring gene protein mono-ADP-ribosyltransferase PARP14-like Neighboring gene protein mono-ADP-ribosyltransferase PARP14-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081198.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    46936815..47016835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059032388.1 → XP_058888371.1  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

  2. XM_059032387.1 → XP_058888370.1  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

  3. XM_034012731.3 → XP_033868622.1  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

    UniProtKB/TrEMBL
    A0A662YW94
    Conserved Domains (2) summary
    pfam15027
    Location:3 → 135
    DUF4525; Domain of unknown function (DUF4525)
    pfam15024
    Location:169 → 723
    Glyco_transf_18; Glycosyltransferase family 18

  4. XM_034012739.3 → XP_033868630.1  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

    UniProtKB/TrEMBL
    A0A662YW94
    Conserved Domains (2) summary
    pfam15027
    Location:3 → 135
    DUF4525; Domain of unknown function (DUF4525)
    pfam15024
    Location:169 → 723
    Glyco_transf_18; Glycosyltransferase family 18

  5. XM_059032389.1 → XP_058888372.1  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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