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LOC117406331 mitogen-activated protein kinase kinase kinase 20-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117406331, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117406331
Gene description
mitogen-activated protein kinase kinase kinase 20-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117406331 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 10 NC_081198.1 (40785999..40820283, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 10 NC_048332.1 (37700074..37734226, complement)

Chromosome 10 - NC_081198.1Genomic Context describing neighboring genes Neighboring gene transcription factor Sp3-like Neighboring gene dynein, axonemal, heavy polypeptide 9 like Neighboring gene cell division cycle-associated protein 7-like Neighboring gene rap guanine nucleotide exchange factor 4 Neighboring gene neurabin-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitogen-activated protein kinase kinase kinase 20-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081198.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    40785999..40820283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034010271.3 → XP_033866162.3  mitogen-activated protein kinase kinase kinase 20-like isoform X1

  2. XM_034010280.3 → XP_033866171.3  mitogen-activated protein kinase kinase kinase 20-like isoform X1

  3. XM_034010291.3 → XP_033866182.2  mitogen-activated protein kinase kinase kinase 20-like isoform X2

    Conserved Domains (1) summary
    cl21453
    Location:22 → 263
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
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