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LOC117405145 histone-lysine N-methyltransferase SETDB2-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117405145, updated on 25-Jan-2024

Summary

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Gene symbol
LOC117405145
Gene description
histone-lysine N-methyltransferase SETDB2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117405145 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 9 NC_081197.1 (32628249..32650492)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 9 NC_048331.1 (26832866..26855860, complement)

Chromosome 9 - NC_081197.1Genomic Context describing neighboring genes Neighboring gene cullin-4A-like Neighboring gene PCI domain-containing protein 2-like Neighboring gene protein CREG1-like Neighboring gene T-cell surface glycoprotein CD3 zeta chain-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA methylation-dependent heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase SETDB2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081197.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    32628249..32650492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034007964.3 → XP_033863855.3  histone-lysine N-methyltransferase SETDB2-like

Nucleotide Protein
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