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extl2 exostosin-like glycosyltransferase 2 [ Acipenser ruthenus (sterlet) ]

Gene ID: 117405024, updated on 10-Oct-2024

Summary

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Gene symbol
extl2
Gene description
exostosin-like glycosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Orthologs
human zebrafish all
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Genomic context

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See extl2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 10 NC_081198.1 (14589606..14595485, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 10 NC_048332.1 (14382005..14386245, complement)

Chromosome 10 - NC_081198.1Genomic Context describing neighboring genes Neighboring gene vascular cell adhesion protein 1-like Neighboring gene vascular cell adhesion protein 1 Neighboring gene zinc transporter 7 Neighboring gene sphingosine 1-phosphate receptor 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081198.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    14589606..14595485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034007824.3 → XP_033863715.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A444U0V6
    Conserved Domains (1) summary
    pfam09258
    Location:60 → 311
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_059031843.1 → XP_058887826.1  exostosin-like 2 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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