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LOC117403767 myocyte-specific enhancer factor 2C [ Acipenser ruthenus (sterlet) ]

Gene ID: 117403767, updated on 6-Jun-2024

Summary

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Gene symbol
LOC117403767
Gene description
myocyte-specific enhancer factor 2C
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117403767 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 1 NC_081189.1 (5321899..5404580, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 1 NC_048323.1 (117719695..117798861)

Chromosome 1 - NC_081189.1Genomic Context describing neighboring genes Neighboring gene nuclear apoptosis-inducing factor 1-like Neighboring gene transmembrane protein 161B-like Neighboring gene centrin-3 Neighboring gene acyl-coenzyme A thioesterase MBLAC2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myocyte-specific enhancer factor 2C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081189.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    5321899..5404580 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059035748.1 → XP_058891731.1  myocyte-specific enhancer factor 2C isoform X10

  2. XM_059035439.1 → XP_058891422.1  myocyte-specific enhancer factor 2C isoform X2

    UniProtKB/TrEMBL
    A0A444UJY3

  3. XM_034925959.2 → XP_034781850.1  myocyte-specific enhancer factor 2C isoform X4

    UniProtKB/TrEMBL
    A0A444UJY3
    Conserved Domains (2) summary
    COG5068
    Location:1 → 271
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

  4. XM_059035528.1 → XP_058891511.1  myocyte-specific enhancer factor 2C isoform X5

  5. XM_034925971.2 → XP_034781862.1  myocyte-specific enhancer factor 2C isoform X9

    UniProtKB/TrEMBL
    A0A444UJY3
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:150 → 197
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  6. XM_059035565.1 → XP_058891548.1  myocyte-specific enhancer factor 2C isoform X6

  7. XM_059035258.1 → XP_058891241.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A444UJY3

  8. XM_034925949.2 → XP_034781840.1  myocyte-specific enhancer factor 2C isoform X3

    UniProtKB/TrEMBL
    A0A444UJY3
    Conserved Domains (2) summary
    COG5068
    Location:1 → 273
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

  9. XM_059035412.1 → XP_058891395.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A444UJY3

  10. XM_059035277.1 → XP_058891260.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A444UJY3

  11. XM_059035312.1 → XP_058891295.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A444UJY3

  12. XM_059035367.1 → XP_058891350.1  myocyte-specific enhancer factor 2C isoform X1

    UniProtKB/TrEMBL
    A0A444UJY3

  13. XM_059035680.1 → XP_058891663.1  myocyte-specific enhancer factor 2C isoform X8

    UniProtKB/TrEMBL
    A0A444UJY3

  14. XM_059035600.1 → XP_058891583.1  myocyte-specific enhancer factor 2C isoform X7

    UniProtKB/TrEMBL
    A0A444UJY3

  15. XM_059035637.1 → XP_058891620.1  myocyte-specific enhancer factor 2C isoform X7

    UniProtKB/TrEMBL
    A0A444UJY3
Nucleotide Protein
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