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tank TRAF family member-associated NFKB activator [ Acipenser ruthenus (sterlet) ]

Gene ID: 117403412, updated on 6-Jun-2024

Summary

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Gene symbol
tank
Gene description
TRAF family member-associated NFKB activator
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Orthologs
human zebrafish all
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Genomic context

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See tank in Genome Data Viewer
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 10 NC_081198.1 (42673098..42688407, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 10 NC_048332.1 (39590716..39606007, complement)

Chromosome 10 - NC_081198.1Genomic Context describing neighboring genes Neighboring gene T-box brain protein 1 Neighboring gene proteasome 26S subunit, non-ATPase 14 Neighboring gene RNA-binding motif, single-stranded-interacting protein 1-like Neighboring gene integrin beta-6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TRAF family member-associated NF-kappa-B activator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081198.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    42673098..42688407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034005549.3 → XP_033861440.1  TRAF family member-associated NF-kappa-B activator isoform X2

    UniProtKB/TrEMBL
    A0A444UJW1
    Conserved Domains (1) summary
    pfam12845
    Location:134 → 186
    TBD; TBD domain

  2. XM_059032315.1 → XP_058888298.1  TRAF family member-associated NF-kappa-B activator isoform X1

    UniProtKB/TrEMBL
    A0A444UJW1

  3. XM_034005542.3 → XP_033861433.1  TRAF family member-associated NF-kappa-B activator isoform X1

    UniProtKB/TrEMBL
    A0A444UJW1
    Conserved Domains (1) summary
    pfam12845
    Location:134 → 187
    TBD; TBD domain

  4. XM_034005560.3 → XP_033861451.1  TRAF family member-associated NF-kappa-B activator isoform X3

    UniProtKB/TrEMBL
    A0A444UJW1
    Conserved Domains (1) summary
    pfam12845
    Location:134 → 187
    TBD; TBD domain
Nucleotide Protein
Heading Accession and Version

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