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LOC117403068 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117403068, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117403068
Gene description
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117403068 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 5 NC_081193.1 (32100312..32162163)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 5 NC_048327.1 (57463152..57514662, complement)

Chromosome 5 - NC_081193.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117969335 Neighboring gene TBC1 domain family member 2A-like Neighboring gene uncharacterized LOC131737119 Neighboring gene probable ribonuclease ZC3H12D Neighboring gene peptidyl-prolyl cis-trans isomerase-like 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081193.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    32100312..32162163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059023990.1 → XP_058879973.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A662YRY4

  2. XM_059023989.1 → XP_058879972.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A662YRY4

  3. XM_059023992.1 → XP_058879975.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X2

Nucleotide Protein
Heading Accession and Version

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