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LOC117401947 evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial [ Acipenser ruthenus (sterlet) ]

Gene ID: 117401947, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117401947
Gene description
evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Also known as
ecsit
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Genomic context

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See LOC117401947 in Genome Data Viewer
Location:
chromosome: 34
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 34 NC_081222.1 (1458503..1468290, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 34 NC_048356.1 (8573674..8583517)

Chromosome 34 - NC_081222.1Genomic Context describing neighboring genes Neighboring gene ferredoxin-2, mitochondrial-like Neighboring gene uncharacterized LOC131705066 Neighboring gene forkhead box protein D1 Neighboring gene protein lyl-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial
Names
ECSIT signaling integrator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081222.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    1458503..1468290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059007030.1 → XP_058863013.1  evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial isoform X1

  2. XM_034002703.3 → XP_033858594.3  evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial isoform X2

  3. XM_034002700.3 → XP_033858591.3  evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial isoform X2

  4. XM_059007032.1 → XP_058863015.1  evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial isoform X2

Nucleotide Protein
Heading Accession and Version

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