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LOC117401467 transducin-like enhancer protein 1 [ Acipenser ruthenus (sterlet) ]

Gene ID: 117401467, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117401467
Gene description
transducin-like enhancer protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117401467 in Genome Data Viewer
Location:
chromosome: 47
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 47 NC_081235.1 (8687945..8709696)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 39 NC_048361.1 (442951..464402, complement)

Chromosome 47 - NC_081235.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide-binding protein subunit alpha-11 Neighboring gene TLE family member 5-like Neighboring gene uncharacterized LOC131721034 Neighboring gene transducin-like enhancer protein 1 Neighboring gene transfer RNA glutamine (anticodon CUG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transducin-like enhancer protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081235.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    8687945..8709696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059013970.1 → XP_058869953.1  transducin-like enhancer protein 1 isoform X14

  2. XM_059013964.1 → XP_058869947.1  transducin-like enhancer protein 1 isoform X8

  3. XM_059013963.1 → XP_058869946.1  transducin-like enhancer protein 1 isoform X7

  4. XM_059013966.1 → XP_058869949.1  transducin-like enhancer protein 1 isoform X10

  5. XM_059013967.1 → XP_058869950.1  transducin-like enhancer protein 1 isoform X11

  6. XM_059013969.1 → XP_058869952.1  transducin-like enhancer protein 1 isoform X13

  7. XM_059013971.1 → XP_058869954.1  transducin-like enhancer protein 1 isoform X14

  8. XM_059013961.1 → XP_058869944.1  transducin-like enhancer protein 1 isoform X5

  9. XM_059013957.1 → XP_058869940.1  transducin-like enhancer protein 1 isoform X1

  10. XM_059013962.1 → XP_058869945.1  transducin-like enhancer protein 1 isoform X6

  11. XM_059013958.1 → XP_058869941.1  transducin-like enhancer protein 1 isoform X2

  12. XM_059013959.1 → XP_058869942.1  transducin-like enhancer protein 1 isoform X3

  13. XM_059013960.1 → XP_058869943.1  transducin-like enhancer protein 1 isoform X4

  14. XM_059013965.1 → XP_058869948.1  transducin-like enhancer protein 1 isoform X9

  15. XM_059013968.1 → XP_058869951.1  transducin-like enhancer protein 1 isoform X12

Nucleotide Protein
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