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LOC117401063 DNA damage-inducible transcript 3 protein [ Acipenser ruthenus (sterlet) ]

Gene ID: 117401063, updated on 23-Nov-2023

Summary

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Gene symbol
LOC117401063
Gene description
DNA damage-inducible transcript 3 protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Also known as
ddit3
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Genomic context

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See LOC117401063 in Genome Data Viewer
Location:
chromosome: 45
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 45 NC_081233.1 (7170658..7175558, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 48 NC_048370.1 (2897008..2901379)

Chromosome 45 - NC_081233.1Genomic Context describing neighboring genes Neighboring gene zinc finger E-box-binding homeobox 2-like Neighboring gene rho GTPase-activating protein 15-like Neighboring gene methionine--tRNA ligase, cytoplasmic-like Neighboring gene methyl-CpG-binding domain protein 5-like Neighboring gene dynactin subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ER overload response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of CREB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of intrinsic apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CHOP-ATF3 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CHOP-ATF4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CHOP-C/EBP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA damage-inducible transcript 3 protein
Names
DNA-damage-inducible transcript 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081233.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    7170658..7175558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059013058.1 → XP_058869041.1  DNA damage-inducible transcript 3 protein

Nucleotide Protein
Heading Accession and Version

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