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plecb plectin b [ Acipenser ruthenus (sterlet) ]

Gene ID: 117400648, updated on 6-Jun-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: 4
Exon count:
47
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 4 NC_081192.1 (3569011..3811085, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 3 NC_048325.1 (103140030..103234533)

Chromosome 4 - NC_081192.1Genomic Context describing neighboring genes Neighboring gene neurotrophin receptor-interacting factor homolog Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene uncharacterized LOC117400653 Neighboring gene aurora kinase A and ninein-interacting protein Neighboring gene VPS28 subunit of ESCRT-I

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081192.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    3569011..3811085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059021366.1 → XP_058877349.1  plectin isoform X8

    UniProtKB/TrEMBL
    A0A444U8G2

  2. XM_059021364.1 → XP_058877347.1  plectin isoform X6

    UniProtKB/TrEMBL
    A0A444U8G2

  3. XM_059021394.1 → XP_058877377.1  plectin isoform X20

    UniProtKB/TrEMBL
    A0A444U8G2

  4. XM_059021363.1 → XP_058877346.1  plectin isoform X5

    UniProtKB/TrEMBL
    A0A444U8G2

  5. XM_059021370.1 → XP_058877353.1  plectin isoform X12

    UniProtKB/TrEMBL
    A0A444U8G2

  6. XM_059021378.1 → XP_058877361.1  plectin isoform X17

    UniProtKB/TrEMBL
    A0A444U8G2

  7. XM_059021362.1 → XP_058877345.1  plectin isoform X3

    UniProtKB/TrEMBL
    A0A444U8G2

  8. XM_059021361.1 → XP_058877344.1  plectin isoform X2

    UniProtKB/TrEMBL
    A0A444U8G2

  9. XM_059021359.1 → XP_058877342.1  plectin isoform X1

    UniProtKB/TrEMBL
    A0A444U8G2

  10. XM_059021360.1 → XP_058877343.1  plectin isoform X1

    UniProtKB/TrEMBL
    A0A444U8G2

  11. XM_034000882.3 → XP_033856773.3  plectin isoform X4

    UniProtKB/TrEMBL
    A0A444U8G2

  12. XM_059021374.1 → XP_058877357.1  plectin isoform X16

    UniProtKB/TrEMBL
    A0A444U8G2

  13. XM_059021384.1 → XP_058877367.1  plectin isoform X18

    UniProtKB/TrEMBL
    A0A444U8G2

  14. XM_059021373.1 → XP_058877356.1  plectin isoform X15

    UniProtKB/TrEMBL
    A0A444U8G2

  15. XM_059021368.1 → XP_058877351.1  plectin isoform X10

    UniProtKB/TrEMBL
    A0A444U8G2

  16. XM_059021365.1 → XP_058877348.1  plectin isoform X7

    UniProtKB/TrEMBL
    A0A444U8G2

  17. XM_059021372.1 → XP_058877355.1  plectin isoform X14

    UniProtKB/TrEMBL
    A0A444U8G2

  18. XM_059021371.1 → XP_058877354.1  plectin isoform X13

    UniProtKB/TrEMBL
    A0A444U8G2

  19. XM_059021369.1 → XP_058877352.1  plectin isoform X11

    UniProtKB/TrEMBL
    A0A444U8G2

  20. XM_059021367.1 → XP_058877350.1  plectin isoform X9

    UniProtKB/TrEMBL
    A0A444U8G2

  21. XM_059021392.1 → XP_058877375.1  plectin isoform X19

    UniProtKB/TrEMBL
    A0A444U8G2
Nucleotide Protein
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