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LOC117400386 NFX1-type zinc finger-containing protein 1-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117400386, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117400386
Gene description
NFX1-type zinc finger-containing protein 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117400386 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 4 NC_081192.1 (94042640..94064211, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 3 NC_048325.1 (13342979..13359442)

Chromosome 4 - NC_081192.1Genomic Context describing neighboring genes Neighboring gene semaphorin-5A-like Neighboring gene ATP synthase subunit C lysine N-methyltransferase-like Neighboring gene uncharacterized LOC117399650 Neighboring gene mitochondrial import inner membrane translocase subunit Tim21-like Neighboring gene neuropilin and tolloid-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulatory ncRNA-mediated heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear RNA-directed RNA polymerase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NFX1-type zinc finger-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081192.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    94042640..94064211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059023107.1 → XP_058879090.1  NFX1-type zinc finger-containing protein 1-like isoform X1

  2. XM_034000268.3 → XP_033856159.3  NFX1-type zinc finger-containing protein 1-like isoform X1

  3. XM_059023108.1 → XP_058879091.1  NFX1-type zinc finger-containing protein 1-like isoform X2

Nucleotide Protein
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