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LOC117400196 catenin delta-2-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117400196, updated on 10-Oct-2024

Summary

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Gene symbol
LOC117400196
Gene description
catenin delta-2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117400196 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 4 NC_081192.1 (22536136..22902267, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 3 NC_048325.1 (83159810..83525219)

Chromosome 4 - NC_081192.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain-containing protein 33B-like Neighboring gene death-associated protein 1 homolog Neighboring gene uncharacterized LOC131736835 Neighboring gene uncharacterized LOC131736836

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendritic spine morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
catenin delta-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081192.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    22536136..22902267 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059022195.1 → XP_058878178.1  catenin delta-2-like isoform X5

  2. XM_033999746.3 → XP_033855637.3  catenin delta-2-like isoform X2

  3. XM_059022197.1 → XP_058878180.1  catenin delta-2-like isoform X7

  4. XM_059022191.1 → XP_058878174.1  catenin delta-2-like isoform X1

  5. XM_059022198.1 → XP_058878181.1  catenin delta-2-like isoform X8

  6. XM_033999749.3 → XP_033855640.1  catenin delta-2-like isoform X6

    UniProtKB/TrEMBL
    A0A444U749
    Conserved Domains (4) summary
    smart00185
    Location:558 → 598
    ARM; Armadillo/beta-catenin-like repeats
    PLN03200
    Location:843 → 974
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00043
    Location:529 → 554
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:809 → 850
    Arm; Armadillo/beta-catenin-like repeat

  7. XM_059022193.1 → XP_058878176.1  catenin delta-2-like isoform X3

  8. XM_059022192.1 → XP_058878175.1  catenin delta-2-like isoform X1

  9. XM_059022194.1 → XP_058878177.1  catenin delta-2-like isoform X4

Nucleotide Protein
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