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unm_hu7910 un-named hu7910 [ Acipenser ruthenus (sterlet) ]

Gene ID: 117399998, updated on 19-Mar-2024

Summary

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Gene symbol
unm_hu7910
Gene description
un-named hu7910
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Orthologs
zebrafish all
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Genomic context

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See unm_hu7910 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 4 NC_081192.1 (28360488..28458187)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 3 NC_048325.1 (78595852..78695028, complement)

Chromosome 4 - NC_081192.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3 Neighboring gene tocopherol (alpha) transfer protein Neighboring gene clavesin-1-like Neighboring gene vasoactive intestinal polypeptide receptor-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081192.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    28360488..28458187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034920542.2 → XP_034776433.2  aspartyl/asparaginyl beta-hydroxylase isoform X8

  2. XM_059022269.1 → XP_058878252.1  aspartyl/asparaginyl beta-hydroxylase isoform X13

  3. XM_034920531.2 → XP_034776422.2  aspartyl/asparaginyl beta-hydroxylase isoform X1

  4. XM_034920532.2 → XP_034776423.2  aspartyl/asparaginyl beta-hydroxylase isoform X2

  5. XM_034920541.2 → XP_034776432.2  aspartyl/asparaginyl beta-hydroxylase isoform X7

  6. XM_034920539.2 → XP_034776430.2  aspartyl/asparaginyl beta-hydroxylase isoform X6

  7. XM_034920537.2 → XP_034776428.2  aspartyl/asparaginyl beta-hydroxylase isoform X4

  8. XM_034920545.2 → XP_034776436.2  aspartyl/asparaginyl beta-hydroxylase isoform X11

  9. XM_034920536.2 → XP_034776427.2  aspartyl/asparaginyl beta-hydroxylase isoform X3

  10. XM_034920546.2 → XP_034776437.2  aspartyl/asparaginyl beta-hydroxylase isoform X12

  11. XM_034920540.2 → XP_034776431.2  aspartyl/asparaginyl beta-hydroxylase isoform X5

  12. XM_034920543.2 → XP_034776434.2  aspartyl/asparaginyl beta-hydroxylase isoform X9

  13. XM_034920544.2 → XP_034776435.2  aspartyl/asparaginyl beta-hydroxylase isoform X10

Nucleotide Protein
Heading Accession and Version

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