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LOC117399665 polypeptide N-acetylgalactosaminyltransferase 15-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117399665, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117399665
Gene description
polypeptide N-acetylgalactosaminyltransferase 15-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117399665 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 4 NC_081192.1 (6036301..6059561, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 3 NC_048325.1 (100656497..100677669)

Chromosome 4 - NC_081192.1Genomic Context describing neighboring genes Neighboring gene raftlin-like Neighboring gene oxidoreductase NAD-binding domain containing 1 Neighboring gene putative nuclease HARBI1 Neighboring gene serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 15-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081192.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    6036301..6059561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033998982.3 → XP_033854873.1  polypeptide N-acetylgalactosaminyltransferase 15-like isoform X2

    Conserved Domains (2) summary
    cd02510
    Location:184 → 482
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:495 → 617
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_033998981.3 → XP_033854872.1  polypeptide N-acetylgalactosaminyltransferase 15-like isoform X1

    Conserved Domains (2) summary
    cd02510
    Location:184 → 482
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:495 → 618
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

RNA

  1. XR_004544130.3 RNA Sequence

  2. XR_004544129.3 RNA Sequence

Nucleotide Protein
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