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LOC117397201 zinc finger and BTB domain-containing protein 44-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117397201, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117397201
Gene description
zinc finger and BTB domain-containing protein 44-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117397201 in Genome Data Viewer
Location:
chromosome: 40
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 40 NC_081228.1 (1768642..1783764)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 42 NC_048364.1 (5279665..5292452, complement)

Chromosome 40 - NC_081228.1Genomic Context describing neighboring genes Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 15 Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 8 Neighboring gene POU class 2 homeobox associating-factor 2-like Neighboring gene POU class 2 homeobox associating factor 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 44-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081228.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    1768642..1783764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034912794.2 → XP_034768685.1  zinc finger and BTB domain-containing protein 44-like isoform X1

    Conserved Domains (5) summary
    COG5189
    Location:275 → 446
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:398 → 418
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:486 → 508
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18228
    Location:12 → 130
    BTB_POZ_ZBTB44; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 44 (ZBTB44)
    pfam13465
    Location:410 → 435
    zf-H2C2_2; Zinc-finger double domain

  2. XM_034912795.2 → XP_034768686.1  zinc finger and BTB domain-containing protein 44-like isoform X1

    Conserved Domains (5) summary
    COG5189
    Location:275 → 446
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:398 → 418
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:486 → 508
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18228
    Location:12 → 130
    BTB_POZ_ZBTB44; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 44 (ZBTB44)
    pfam13465
    Location:410 → 435
    zf-H2C2_2; Zinc-finger double domain

  3. XM_034912796.2 → XP_034768687.1  zinc finger and BTB domain-containing protein 44-like isoform X2

    Conserved Domains (4) summary
    COG5189
    Location:275 → 446
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:398 → 418
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18228
    Location:12 → 130
    BTB_POZ_ZBTB44; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 44 (ZBTB44)
    pfam13465
    Location:410 → 435
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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