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LOC117397016 whirlin [ Acipenser ruthenus (sterlet) ]

Gene ID: 117397016, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117397016
Gene description
whirlin
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
Also known as
whrna
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Genomic context

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See LOC117397016 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 31 NC_081219.1 (15082935..15121697, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 30 NC_048352.1 (17767410..17803312, complement)

Chromosome 31 - NC_081219.1Genomic Context describing neighboring genes Neighboring gene protein Niban 2-like Neighboring gene syntaxin-binding protein 1 Neighboring gene microtubule organization protein AKNA Neighboring gene neutrophil cytosol factor 2-like Neighboring gene neural proliferation differentiation and control protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in auditory receptor cell stereocilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor inner segment IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of stereocilia ankle link complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stereocilium tip IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
whirlin
Names
whirlin a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081219.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    15082935..15121697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059005494.1 → XP_058861477.1  whirlin isoform X1

  2. XM_059005496.1 → XP_058861479.1  whirlin isoform X3

  3. XM_059005495.1 → XP_058861478.1  whirlin isoform X2

  4. XM_059005497.1 → XP_058861480.1  whirlin isoform X4

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases