U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117394765 tyrosine-protein phosphatase non-receptor type 7-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117394765, updated on 26-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC117394765
Gene description
tyrosine-protein phosphatase non-receptor type 7-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117394765 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 30 NC_081218.1 (9702439..9716436)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 28 NC_048350.1 (16255610..16269754)

Chromosome 30 - NC_081218.1Genomic Context describing neighboring genes Neighboring gene parathyroid hormone 4-like Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP5-like Neighboring gene ADP-ribosylation factor-like protein 8A Neighboring gene G-protein coupled receptor 37-like 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tyrosine-protein phosphatase non-receptor type 7-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081218.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    9702439..9716436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033993309.3 → XP_033849200.1  tyrosine-protein phosphatase non-receptor type 7-like

    Conserved Domains (1) summary
    cl28904
    Location:106 → 350
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  2. XM_033993319.3 → XP_033849210.1  tyrosine-protein phosphatase non-receptor type 7-like

    Conserved Domains (1) summary
    cl28904
    Location:106 → 350
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  3. XM_059005017.1 → XP_058861000.1  tyrosine-protein phosphatase non-receptor type 7-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases