U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

psd2 pleckstrin and Sec7 domain containing 2 [ Periophthalmus magnuspinnatus ]

Gene ID: 117377900, updated on 22-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
psd2
Gene description
pleckstrin and Sec7 domain containing 2
See related
EnsemblRapid:ENSPMGG00005001039
Gene type
protein coding
RefSeq status
MODEL
Organism
Periophthalmus magnuspinnatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Periophthalmus
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See psd2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_04 current fPerMag1.2.pri (GCF_009829125.3) 10 NC_047135.1 (10335370..10624206, complement)
100 previous assembly fPerMag1.pri (GCF_009829125.1) 10 NC_047135.1 (10337774..10381545, complement)

Chromosome 10 - NC_047135.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene neuregulin 2b Neighboring gene purine-rich element binding protein Ab Neighboring gene uncharacterized LOC117378145 Neighboring gene uncharacterized LOC117377204 Neighboring gene CXXC finger protein 5b Neighboring gene ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) Neighboring gene protein phosphatase 3, catalytic subunit, beta isozyme Neighboring gene DNA damage-inducible transcript 4-like protein-like Neighboring gene stimulator of interferon response cGAMP interactor 1 Neighboring gene glypican-6-like Neighboring gene glypican-6-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of ARF protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
PH and SEC7 domain-containing protein 2; uncharacterized protein psd2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_009829125.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPerMag1.2.pri

Genomic

  1. NC_047135.1 Reference fPerMag1.2.pri

    Range
    10335370..10624206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033974419.2 → XP_033830310.1  PH and SEC7 domain-containing protein 2 isoform X2

    Related
    ENSPMGP00005001910.1, ENSPMGT00005002162.1
    Conserved Domains (2) summary
    cd00171
    Location:37 → 208
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
    cd13295
    Location:254 → 377
    PH_EFA6; Exchange Factor for ARF6 Pleckstrin homology (PH) domain

  2. XM_033974418.2 → XP_033830309.2  uncharacterized protein psd2 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.