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NCOA3 nuclear receptor coactivator 3 [ Geotrypetes seraphini ]

Gene ID: 117369340, updated on 19-Mar-2024

Summary

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Gene symbol
NCOA3
Gene description
nuclear receptor coactivator 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
Orthologs
human mouse all
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Genomic context

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See NCOA3 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
25
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 11 NC_047094.1 (112172324..112446175, complement)

Chromosome 11 - NC_047094.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC117368868 Neighboring gene sulfatase 2 Neighboring gene translocating chain-associated membrane protein 1-like 1 Neighboring gene zinc finger MYND-type containing 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047094.1 Chromosome 11 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor coactivator 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047094.1 Reference aGeoSer1.1 Primary Assembly

    Range
    112172324..112446175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033963802.1 → XP_033819693.1  nuclear receptor coactivator 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P8SUG7
    Conserved Domains (9) summary
    smart00091
    Location:118 → 175
    PAS; PAS domain
    pfam09606
    Location:816 → 1016
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam07469
    Location:1262 → 1317
    DUF1518; Domain of unknown function (DUF1518)
    pfam08815
    Location:1036 → 1082
    Nuc_rec_co-act; Nuclear receptor coactivator
    pfam08832
    Location:614 → 701
    SRC-1; Steroid receptor coactivator
    pfam14598
    Location:267 → 377
    PAS_11; PAS domain
    pfam16279
    Location:719 → 806
    DUF4927; Domain of unknown function (DUF4927)
    pfam16665
    Location:459 → 570
    NCOA_u2; Unstructured region on nuclear receptor coactivator protein
    cl00081
    Location:31 → 103
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  2. XM_033963800.1 → XP_033819691.1  nuclear receptor coactivator 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P8SKY2
    Conserved Domains (9) summary
    smart00091
    Location:118 → 175
    PAS; PAS domain
    pfam09606
    Location:816 → 1016
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam07469
    Location:1263 → 1318
    DUF1518; Domain of unknown function (DUF1518)
    pfam08815
    Location:1036 → 1082
    Nuc_rec_co-act; Nuclear receptor coactivator
    pfam08832
    Location:614 → 701
    SRC-1; Steroid receptor coactivator
    pfam14598
    Location:267 → 377
    PAS_11; PAS domain
    pfam16279
    Location:719 → 806
    DUF4927; Domain of unknown function (DUF4927)
    pfam16665
    Location:459 → 570
    NCOA_u2; Unstructured region on nuclear receptor coactivator protein
    cl00081
    Location:31 → 103
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  3. XM_033963799.1 → XP_033819690.1  nuclear receptor coactivator 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P8SKY2
    Conserved Domains (9) summary
    smart00091
    Location:118 → 175
    PAS; PAS domain
    pfam09606
    Location:816 → 1016
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam07469
    Location:1263 → 1318
    DUF1518; Domain of unknown function (DUF1518)
    pfam08815
    Location:1036 → 1082
    Nuc_rec_co-act; Nuclear receptor coactivator
    pfam08832
    Location:614 → 701
    SRC-1; Steroid receptor coactivator
    pfam14598
    Location:267 → 377
    PAS_11; PAS domain
    pfam16279
    Location:719 → 806
    DUF4927; Domain of unknown function (DUF4927)
    pfam16665
    Location:459 → 570
    NCOA_u2; Unstructured region on nuclear receptor coactivator protein
    cl00081
    Location:31 → 103
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  4. XM_033963801.1 → XP_033819692.1  nuclear receptor coactivator 3 isoform X2

    UniProtKB/TrEMBL
    A0A6P8SMB7
    Conserved Domains (9) summary
    smart00091
    Location:118 → 175
    PAS; PAS domain
    pfam09606
    Location:816 → 1015
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam07469
    Location:1262 → 1317
    DUF1518; Domain of unknown function (DUF1518)
    pfam08815
    Location:1035 → 1081
    Nuc_rec_co-act; Nuclear receptor coactivator
    pfam08832
    Location:614 → 701
    SRC-1; Steroid receptor coactivator
    pfam14598
    Location:267 → 377
    PAS_11; PAS domain
    pfam16279
    Location:719 → 806
    DUF4927; Domain of unknown function (DUF4927)
    pfam16665
    Location:459 → 570
    NCOA_u2; Unstructured region on nuclear receptor coactivator protein
    cl00081
    Location:31 → 103
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  5. XM_033963798.1 → XP_033819689.1  nuclear receptor coactivator 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P8SKY2
    Conserved Domains (9) summary
    smart00091
    Location:118 → 175
    PAS; PAS domain
    pfam09606
    Location:816 → 1016
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam07469
    Location:1263 → 1318
    DUF1518; Domain of unknown function (DUF1518)
    pfam08815
    Location:1036 → 1082
    Nuc_rec_co-act; Nuclear receptor coactivator
    pfam08832
    Location:614 → 701
    SRC-1; Steroid receptor coactivator
    pfam14598
    Location:267 → 377
    PAS_11; PAS domain
    pfam16279
    Location:719 → 806
    DUF4927; Domain of unknown function (DUF4927)
    pfam16665
    Location:459 → 570
    NCOA_u2; Unstructured region on nuclear receptor coactivator protein
    cl00081
    Location:31 → 103
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
Nucleotide Protein
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