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RPIA ribose 5-phosphate isomerase A [ Geotrypetes seraphini ]

Gene ID: 117363858, updated on 19-Mar-2024

Summary

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Gene symbol
RPIA
Gene description
ribose 5-phosphate isomerase A
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
Orthologs
human mouse all
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Genomic context

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See RPIA in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 1 NC_047084.1 (276771247..276834596)

Chromosome 1 - NC_047084.1Genomic Context describing neighboring genes Neighboring gene octopamine receptor-like Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 3 Neighboring gene U11 spliceosomal RNA Neighboring gene Ig kappa chain V region Mem5-like Neighboring gene immunoglobulin kappa variable 3D-20-like Neighboring gene gastrula zinc finger protein XlCGF26.1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047084.1 Chromosome 1 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribose-5-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-ribose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribose-5-phosphate isomerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047084.1 Reference aGeoSer1.1 Primary Assembly

    Range
    276771247..276834596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033952385.1 → XP_033808276.1  ribose-5-phosphate isomerase isoform X2

    UniProtKB/TrEMBL
    A0A6P8RTW4
    Conserved Domains (1) summary
    cd01398
    Location:13 → 219
    RPI_A; Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...

  2. XM_033952360.1 → XP_033808251.1  ribose-5-phosphate isomerase isoform X1

    UniProtKB/TrEMBL
    A0A6P8RRL6
    Conserved Domains (1) summary
    cd01398
    Location:18 → 234
    RPI_A; Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...

  3. XM_033952367.1 → XP_033808258.1  ribose-5-phosphate isomerase isoform X1

    UniProtKB/TrEMBL
    A0A6P8RRL6
    Conserved Domains (1) summary
    cd01398
    Location:18 → 234
    RPI_A; Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...

  4. XM_033952351.1 → XP_033808242.1  ribose-5-phosphate isomerase isoform X1

    UniProtKB/TrEMBL
    A0A6P8RRL6
    Conserved Domains (1) summary
    cd01398
    Location:18 → 234
    RPI_A; Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...

  5. XM_033952339.1 → XP_033808230.1  ribose-5-phosphate isomerase isoform X1

    UniProtKB/TrEMBL
    A0A6P8RRL6
    Conserved Domains (1) summary
    cd01398
    Location:18 → 234
    RPI_A; Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...

  6. XM_033952378.1 → XP_033808269.1  ribose-5-phosphate isomerase isoform X1

    UniProtKB/TrEMBL
    A0A6P8RRL6
    Conserved Domains (1) summary
    cd01398
    Location:18 → 234
    RPI_A; Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...

RNA

  1. XR_004540139.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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