U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SGCG sarcoglycan gamma [ Geotrypetes seraphini ]

Gene ID: 117362508, updated on 19-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SGCG
Gene description
sarcoglycan gamma
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SGCG in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 6 NC_047089.1 (43936777..44081917)

Chromosome 6 - NC_047089.1Genomic Context describing neighboring genes Neighboring gene mitochondrial calcium uptake 2 Neighboring gene fibroblast growth factor 9 Neighboring gene sacsin molecular chaperone Neighboring gene TNF receptor superfamily member 19

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_047089.1 Chromosome 6 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047089.1 Reference aGeoSer1.1 Primary Assembly

    Range
    43936777..44081917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033948988.1 → XP_033804879.1  gamma-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0A6P8R4B8
    Conserved Domains (1) summary
    pfam04790
    Location:28 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_033948990.1 → XP_033804881.1  gamma-sarcoglycan isoform X6

    UniProtKB/TrEMBL
    A0A6P8RK92
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_033948987.1 → XP_033804878.1  gamma-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A6P8RI44
    Conserved Domains (1) summary
    pfam04790
    Location:45 → 297
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_033948989.1 → XP_033804880.1  gamma-sarcoglycan isoform X6

    UniProtKB/TrEMBL
    A0A6P8RK92
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_033948983.1 → XP_033804874.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P8R4B5
    Conserved Domains (1) summary
    pfam04790
    Location:53 → 305
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_033948986.1 → XP_033804877.1  gamma-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A6P8R4F6
    Conserved Domains (1) summary
    pfam04790
    Location:46 → 298
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_033948985.1 → XP_033804876.1  gamma-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6P8RK91
    Conserved Domains (1) summary
    pfam04790
    Location:52 → 304
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.