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SDC2 syndecan 2 [ Geotrypetes seraphini ]

Gene ID: 117355171, updated on 19-Mar-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 2 NC_047085.1 (71728530..71897145, complement)

Chromosome 2 - NC_047085.1Genomic Context describing neighboring genes Neighboring gene metadherin Neighboring gene carboxypeptidase Q Neighboring gene 5S ribosomal RNA Neighboring gene phosphatidylserine synthase 1 Neighboring gene mitochondrial transcription termination factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047085.1 Chromosome 2 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047085.1 Reference aGeoSer1.1 Primary Assembly

    Range
    71728530..71897145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033933326.1 → XP_033789217.1  syndecan-2

    UniProtKB/TrEMBL
    A0A6P8PL29
    Conserved Domains (1) summary
    pfam01034
    Location:144 → 203
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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