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CHID1 chitinase domain containing 1 [ Geotrypetes seraphini ]

Gene ID: 117352126, updated on 19-Mar-2024

Summary

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Gene symbol
CHID1
Gene description
chitinase domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
Orthologs
human mouse all
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Genomic context

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See CHID1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
16
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 19 NC_047102.1 (32485123..32703493, complement)

Chromosome 19 - NC_047102.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117352135 Neighboring gene tetraspanin 4 Neighboring gene uncharacterized LOC117352138 Neighboring gene uncharacterized LOC117352133 Neighboring gene mucin-2-like Neighboring gene mucin 2, oligomeric mucus/gel-forming Neighboring gene mucin 6, oligomeric mucus/gel-forming

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047102.1 Chromosome 19 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047102.1 Reference aGeoSer1.1 Primary Assembly

    Range
    32485123..32703493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033928275.1 → XP_033784166.1  chitinase domain-containing protein 1

    UniProtKB/TrEMBL
    A0A6P8QBG2
    Conserved Domains (1) summary
    cd02876
    Location:77 → 393
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

RNA

  1. XR_004537584.1 RNA Sequence

  2. XR_004537585.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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